dhtslib ~dstep2 (2022-03-14T21:51:44.4661389)
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VCFReaderImpl.this
dhtslib
vcf
reader
VCFReaderImpl
read existing VCF file
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this
()
this
(TabixIndexedFile tbxFile, string chrom, Interval!cs coords, int extra_threads, UnpackLevel MAX_UNPACK)
this
(string fn, int extra_threads, UnpackLevel MAX_UNPACK)
struct
VCFReaderImpl
(CoordSystem cs, bool isTabixFile)
static if
(!(
isTabixFile
))
this
(
string
fn
,
int
extra_threads
= -1
,
UnpackLevel
MAX_UNPACK
=
UnpackLevel.None
)
Detailed Description
MAX UNPACK
setting alternate value could speed reading
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vcf
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constructors
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functions
front
getHeader
initializeTabixRange
popFront
save
postblits
this(this)
properties
empty
variables
MAX_UNPACK
b
fp
tbx
tbxRange
vcfhdr
read existing VCF file