dhtslib

Modules

bgzf

module dhtslib.bgzf

This module provides a wrapper, BGZFile, over an htslib BGZF compressed file/stream. The wrapper acts as a linewise ForwardRange over the file or stream.

coordinates

module dhtslib.coordinates

Coordinates and Coordinate Systems

faidx

module dhtslib.faidx

This module provides a wrapper, IndexedFastaFile over a FASTA. If an index exists, it will be used for rapid random access. If an index does not exist, one will be built.

fastq

module dhtslib.fastq

Undocumented in source.

sam

module dhtslib.sam

SAMRecord and SAMFile are wrappers for htslib functions relating to SAM/BAM/CRAM* files

tabix

module dhtslib.tabix

Module providing a wrapper, TabixIndexedFile over a line-oriented NGS flat file, such as BED, GFF3, VCF that has been indexed with tabix.

vcf

module dhtslib.vcf

Module provides VCF Reader/Writer

Public Imports

dhtslib.bgzf

public import dhtslib.bgzf;

Undocumented in source.

dhtslib.sam.cigar

public import dhtslib.sam.cigar;

Undocumented in source.

dhtslib.faidx

public import dhtslib.faidx;

Undocumented in source.

dhtslib.sam

public import dhtslib.sam;

Undocumented in source.

dhtslib.tabix

public import dhtslib.tabix;

Undocumented in source.

dhtslib.vcf

public import dhtslib.vcf;

Undocumented in source.

dhtslib.fastq

public import dhtslib.fastq;

Undocumented in source.

• dhtslib
• htslib