htslib

Modules

bgzf module htslib.bgzf: @file htslib/bgzf.h Low-level routines for direct BGZF operations.
cram module htslib.cram: @file Consider using the higher level hts_*() API for programs that wish to be file format agnostic (see htslib/hts.h).
faidx module htslib.faidx: @file htslib/faidx.h FASTA random access.
hfile module htslib.hfile: @file htslib/hfile.h Buffered low-level input/output streams.
hts module htslib.hts: @file htslib/hts.h Format-neutral I/O, indexing, and iterator API functions.
hts_endian module htslib.hts_endian: @file hts_endian.h Byte swapping and unaligned access functions.
hts_expr module htslib.hts_expr: Undocumented in source.
hts_log module htslib.hts_log: \file htslib/hts_log.h Configuration of log levels.
hts_os module htslib.hts_os: @file hts_os.h Operating System specific tweaks, for compatibility with POSIX.
kbitset module htslib.kbitset: Undocumented in source.
kfunc module htslib.kfunc: Undocumented in source.
knetfile module htslib.knetfile: Undocumented in source.
kroundup module htslib.kroundup: Undocumented in source.
kstring module htslib.kstring: Undocumented in source.
regidx module htslib.regidx: @file htslib/regidx.h Region indexing.
sam module htslib.sam: @file htslib/sam.h High-level SAM/BAM/CRAM sequence file operations.
synced_bcf_reader module htslib.synced_bcf_reader: @file htslib/synced_bcf_reader.h Stream through multiple VCF files.
tbx module htslib.tbx: @file htslib/tbx.h Tabix API functions.
thread_pool module htslib.thread_pool: @file htslib/thread_pool.h Thread pool for multi-threading applications.
vcf module htslib.vcf: @file htslib/vcf.h High-level VCF/BCF variant calling file operations. Section numbers refer to VCF Specification v4.2: https://samtools.github.io/hts-specs/VCFv4.2.pdf
vcf_sweep module htslib.vcf_sweep: @file htslib/vcf_sweep.h Forward/reverse sweep API.
vcfutils module htslib.vcfutils: @file htslib/vcfutils.h Allele-related utility functions.

modules