htslib.kbitset

Undocumented in source.

Members

Functions

KBS_ELT auto KBS_ELT(T i): Undocumented in source. Be warned that the author may not have intended to support it.
KBS_MASK auto KBS_MASK(T i): Undocumented in source. Be warned that the author may not have intended to support it.
kbs_clear void kbs_clear(kbitset_t* bs): Reset the bit set to empty.
kbs_delete void kbs_delete(kbitset_t* bs, int i): Remove an element from the bit set.
kbs_destroy void kbs_destroy(kbitset_t* bs): Destroy a bit set.
kbs_exists int kbs_exists(const(kbitset_t)* bs, int i): Test whether the bit set contains the element.
kbs_init kbitset_t* kbs_init(size_t ni): Initialise an empty bit set capable of holding ni integers, 0 <= i < ni.
kbs_init2 kbitset_t* kbs_init2(size_t ni, int fill): Initialise a bit set capable of holding ni integers, 0 <= i < ni. The set returned is empty if fill == 0, or all of [0,ni) otherwise. bn is always non-zero (a fact used by kbs_next()).
kbs_insert void kbs_insert(kbitset_t* bs, int i): Insert an element into the bit set.
kbs_insert_all void kbs_insert_all(kbitset_t* bs): Reset the bit set to all of [0,ni).
kbs_last_mask c_ulong kbs_last_mask(size_t ni): (For internal use only.) Returns a mask (like 00011111) showing which bits are in use in the last slot (for the given ni) set.
kbs_next int kbs_next(const(kbitset_t)* bs, kbitset_iter_t* itr): Return the next element contained in the bit set, or -1 if there are no more.
kbs_resize
int kbs_resize(kbitset_t** bsp, size_t ni_new): Resize an existing bit set to be capable of holding ni_new integers. Returns negative on error.
kbs_resize2
int kbs_resize2(kbitset_t** bsp, size_t ni_new, int fill): Resize an existing bit set to be capable of holding ni_new integers. Elements in [ni_old,ni_new) are added to the set if fill != 0. Need to clear excess bits when fill!=0 or n_new<n; always is simpler.
kbs_start void kbs_start(kbitset_iter_t* itr): Initialise or reset a bit set iterator.

Manifest constants

KBS_ELTBITS enum KBS_ELTBITS;: Undocumented in source but is binding to C. You might be able to learn more by searching the web for its name.

Structs

kbitset_iter_t struct kbitset_iter_t: Undocumented in source but is binding to C. You might be able to learn more by searching the web for its name.
kbitset_t struct kbitset_t: Undocumented in source but is binding to C. You might be able to learn more by searching the web for its name.

htslib.kbitset

Members

Functions

Manifest constants

Structs

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