dhtslib ~master (2020-09-09T05:17:46Z)

SAMRecord.getAlignedPairs

dhtslib sam SAMRecord

get a range of aligned read and reference positions this is meant to recreate functionality from pysam: https://pysam.readthedocs.io/en/latest/api.html#pysam.AlignedSegment.get_aligned_pairs

  1. auto getAlignedPairs(long start, long end)
  2. auto getAlignedPairs()
    class SAMRecord
    auto
    getAlignedPairs
    (
    bool withRefSeq
    )
    ()

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