test.tabix_gffreader source code

1 module test.tabix_gffreader;
2 
3 import std.stdio;
4 
5 import dhtslib.tabix;
6 
7 int main(string[] args)
8 {
9     writeln("tabix_gffreader");
10 
11     writeln(args[0], args[1]);
12     TabixIndexedFile tf = TabixIndexedFile(args[1]);
13 
14     string[] seqnames = tf.sequenceNames;
15     writeln("Sequence names: ");
16     writeln(seqnames);
17     
18     //auto r = tf.region("chr1:1-14409");
19     auto r = tf.region("chr1:12000-12000");
20 
21     foreach(line ; r) {
22         writeln(line[0 .. 80]);
23     }
24 
25     writeln(r);
26 /*
27     writeln("Writing Range r as array:");
28     writeln(r);
29     writeln("Repeating again with spent r");
30     writeln(r);
31     writeln("Repeating again (again) with spent r");
32     writeln(r);
33 
34     r = tf.region("chr1:1-14409");
35     writeln("Writing Range r as rows:");
36     foreach(line; r) {
37         if (line.length > 80) { writeln(line[0 .. 80]); }
38     }
39 */
40     return 0;
41 }