BGZF

Block Gzipped File

extern (C)

struct BGZF {

int cache_size;

int block_length;

int block_clength;

int block_offset;

int64_t block_address;

int64_t uncompressed_address;

void* uncompressed_block;

void* compressed_block;

bgzf_cache_t* cache;

bgzf_mtaux_t* mt;

bgzidx_t* idx;

int idx_build_otf;

z_stream* gz_stream;

}

Members

Variables

block_address int64_t block_address;: ?
block_clength int block_clength;: ?
block_length int block_length;: ?
block_offset int block_offset;: ?
cache bgzf_cache_t* cache;: cache
cache_size int cache_size;: cache size in bytes
compressed_block void* compressed_block;: data ptr
fp hFILE* fp;: actual file handle
gz_stream z_stream* gz_stream;: for gzip-compressed files
idx bgzidx_t* idx;: BGZF index
idx_build_otf int idx_build_otf;: build index on the fly, set by bgzf_index_build_init()
mt bgzf_mtaux_t* mt;: only used for multi-threading
uncompressed_address int64_t uncompressed_address;: ?
uncompressed_block void* uncompressed_block;: data ptr

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Source

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