TagValue

This represents a tag value from a bam record This should be to the bam specification. It stores only a pointer to the tag and from there can be parsed into any of the tag types but only if the tag matches that type. c byte C ubyte s short S ushort i int I uint f float Bc array of type byte Z char array H hex?

Memory layout pipes delimit byte boundaries in an array 8/9 are example values 2 is a count of the array the ubyte * starts at the type char c | 8| s | | 8| i | | | | 8| B |i | | | | 2| | | | 8| | | | 9|

struct TagValue {

this(bam1_t* b, char[2] tag);

bool exists [@property getter];

bool check();

bool check();

bool check();

string toString();

long toInt();

long[] toIntArray();

float[] toFloatArray();

}

Constructors

this this(bam1_t* b, char[2] tag): Constructor

Members

Functions

check bool check(): Check if tag type is type T
check bool check(): Check if tag type is type T
check bool check(): Check if tag type is type T
to string to(): Convert tag value
to T to(): Convert tag value
to T[] to(): Convert tag value
toFloatArray float[] toFloatArray(): Convert tag value to float array
toInt long toInt(): Convert tag value to integer
toIntArray long[] toIntArray(): Convert tag value to integer array
toString string toString(): Convert tag value to string

Properties

exists bool exists [@property getter]: check if empty/exists/null

Detailed Description

Alias seq allows us to have an enum of types. https://forum.dlang.org/post/kmdjfzpugudmwfrdgson@forum.dlang.org Thanks Paul!

Usage: auto t = TagValue(b, 'XX') where b is bam1_t* BAM record and XX is tag

Meta

Source

See Implementation

dhtslib tagvalue aliases

Types

enums

TypeIndex

structs

TagValue

variables

TypeChars