dhtslib ~develop (2022-01-25T20:23:39.6291596)

IndexedFastaFile.opSlice

dhtslib faidx IndexedFastaFile

Fetch sequence in region by multidimensional slicing: string sequence = fafile["chr2", 20123 .. 30456]

Sadly, $ to represent max length is not supported

  1. auto opSlice(Coordinate!bs start, OffsetType off)
  2. auto opSlice(OffsetType start, OffsetType end)
  3. auto opSlice(Coordinate!bs start, Coordinate!bs end)
    struct IndexedFastaFile
    auto
    opSlice
    (
    size_t dim
    Basis bs
    )
    (
    Coordinate!bs start
    ,
    Coordinate!bs end
    )
    if (
    dim == 1
    )

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dhtslib faidx IndexedFastaFile constructorsfunctionsproperties

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