dhtslib

Undocumented in source.

Modules

bed module dhtslib.bed: Undocumented in source.
bgzf module dhtslib.bgzf: This module provides a wrapper, BGZFile, over an htslib BGZF compressed file/stream. The wrapper acts as a linewise ForwardRange over the file or stream.
coordinates module dhtslib.coordinates: Coordinates and Coordinate Systems
faidx module dhtslib.faidx: This module provides a wrapper, IndexedFastaFile over a FASTA. If an index exists, it will be used for rapid random access. If an index does not exist, one will be built.
fastq module dhtslib.fastq: Undocumented in source.
gff module dhtslib.gff: GFF file reading and writing
memory module dhtslib.memory: Undocumented in source.
recordwriter module dhtslib.recordwriter: Undocumented in source.
sam module dhtslib.sam: SAMRecord and SAMFile are wrappers for htslib functions relating to SAM/BAM/CRAM* files
tabix module dhtslib.tabix: Module providing a wrapper, TabixIndexedFile over a line-oriented NGS flat file, such as BED, GFF3, VCF that has been indexed with tabix.
util module dhtslib.util: Undocumented in source.
vcf module dhtslib.vcf: Undocumented in source.

dhtslib.coordinates public import dhtslib.coordinates;: Undocumented in source.

dhtslib.recordwriter public import dhtslib.recordwriter;: Undocumented in source.