dhtslib.file.file

Members

Enums

HtslibFileFormatMode

enum HtslibFileFormatMode

Undocumented in source.

HtslibFileWriteMode

enum HtslibFileWriteMode

Some shortcut mode strings for different file types As a reminder: b binary format (BAM, BCF, etc) rather than text (SAM, VCF, etc) c CRAM format g gzip compressed u uncompressed z bgzf compressed [0-9] zlib compression level

Structs

HtslibFile

struct HtslibFile

HtslibFile is an abstraction for htslib's htsFile using dhtslib.memory for reference counting.

• file
• iterator