CigarOp

Represents a distinct cigar operation

union CigarOp {

this(uint raw);

this(uint len, Ops op);

bool isQueryConsuming();

bool isReferenceConsuming();

bool isMatchOrMismatch();

bool isClipping();

alias is_query_consuming = isQueryConsuming;

alias is_reference_consuming = isReferenceConsuming;

alias is_match_or_mismatch = isMatchOrMismatch;

alias is_clipping = isClipping;

}

Constructors

this this(uint raw): construct Op from raw opcode
this this(uint len, Ops op): construct Op from an operator and operand (length)

Members

Aliases

is_clipping alias is_clipping = isClipping: Undocumented in source.
is_match_or_mismatch alias is_match_or_mismatch = isMatchOrMismatch: Undocumented in source.
is_query_consuming alias is_query_consuming = isQueryConsuming: Undocumented in source.
is_reference_consuming alias is_reference_consuming = isReferenceConsuming: Undocumented in source.

Functions

isClipping bool isClipping(): True iff operation is one of 'S', 'H'
isMatchOrMismatch bool isMatchOrMismatch(): True iff operation is one of M, =, X
isQueryConsuming bool isQueryConsuming(): Credit to Biod for this code below https://github.com/biod/BioD from their bam.cigar module True iff operation is one of M, =, X, I, S
isReferenceConsuming bool isReferenceConsuming(): True iff operation is one of M, =, X, D, N

Variables

raw uint raw;: raw opcode

Meta

Source

See Implementation

dhtslib cigar enums

Ops

functions

structs

unions

CigarOp

variables

CIGAR_STR