SAMReader.RegionList

List of regions based on sam/bam

struct SAMReader

struct RegionList {

import std.algorithm.iteration : splitter;;

import std.algorithm.sorting : sort;;

import std.range : drop, array;;

import std.conv : to;;

this(SAMFile* sam, string[] queries);

void addRegion(string reg);

void addRegion(int tid, int beg, int end);

hts_reglist_t[] getRegList();

}

Constructors

this this(SAMFile* sam, string[] queries)

Members

Functions

addRegion void addRegion(string reg): Add a region in standard format (chr1:2000-3000) to the RegionList
addRegion void addRegion(int tid, int beg, int end): Add a region by {target/contig/chr id, start coord, end coord} to the RegionList
getRegList hts_reglist_t[] getRegList(): Undocumented in source. Be warned that the author may not have intended to support it.

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dhtslib sam SAMReader aliases

allRecords

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this

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