dhtslib.tabix

Module providing a wrapper, TabixIndexedFile over a line-oriented NGS flat file, such as BED, GFF3, VCF that has been indexed with tabix.

The wrapper provides a list of reference sequence names, as well as iterator over all rows falling within a sequence range, e.g. "chr1:1000-2000"

Members

Structs

TabixIndexedFile
struct TabixIndexedFile

Encapsulates a position-sorted record-oriented NGS flat file, indexed with Tabix, including BED, GFF3, VCF.

Meta