bam1_core_t

** Alignment records ***

extern (C)

struct bam1_core_t {

hts_pos_t pos;

ubyte l_extranul;

ushort l_qname;

uint n_cigar;

hts_pos_t mpos;

hts_pos_t isize;

}

Members

Variables

bin ushort bin;: Undocumented in source.
flag ushort flag;: Undocumented in source.
isize hts_pos_t isize;: Undocumented in source.
l_extranul ubyte l_extranul;: Undocumented in source.
l_qname ushort l_qname;: Undocumented in source.
l_qseq int l_qseq;: Undocumented in source.
mpos hts_pos_t mpos;: Undocumented in source.
mtid int mtid;: Undocumented in source.
n_cigar uint n_cigar;: Undocumented in source.
pos hts_pos_t pos;: Undocumented in source.
qual ubyte qual;: Undocumented in source.
tid int tid;: Undocumented in source.

Meta

Source

See Implementation

htslib sam aliases

functions

manifest constants

static variables

bam_cigar_table

structs

unions

bam_pileup_cd