dhtslib ~cigar_and_md_api (2022-01-17T03:42:31.0299165)
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bcf_get_variant_types
dhtslib
htslib
vcf
bcf_get_variant_type
s
- returns one of VCF_REF, VCF_SNP, etc
extern (
C
)
int
bcf_get_variant_types
(
bcf1_t
*
rec
)
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vcf
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BCF_UN_IND
bcf_clear1
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enums
BCF_HL_FLT
functions
bcf_add_filter
bcf_add_id
bcf_alleles2gt
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bcf_copy
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bcf_dup
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bcf_enc_inttype
bcf_enc_vchar
bcf_enc_vfloat
bcf_enc_vint
bcf_float_is_missing
bcf_float_is_vector_end
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bcf_fmt_sized_array
bcf_get_fmt
bcf_get_fmt_id
bcf_get_format_char
bcf_get_format_float
bcf_get_format_int32
bcf_get_format_string
bcf_get_format_values
bcf_get_genotypes
bcf_get_info
bcf_get_info_flag
bcf_get_info_float
bcf_get_info_id
bcf_get_info_int32
bcf_get_info_string
bcf_get_info_values
bcf_get_variant_type
bcf_get_variant_types
bcf_gt2alleles
bcf_gt_allele
bcf_gt_is_missing
bcf_gt_is_phased
bcf_gt_phased
bcf_gt_unphased
bcf_has_filter
bcf_hdr_add_hrec
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bcf_hdr_append
bcf_hdr_combine
bcf_hdr_destroy
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bcf_hdr_fmt_text
bcf_hdr_format
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bcf_hdr_id2number
bcf_hdr_id2type
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bcf_hdr_init
bcf_hdr_int2id
bcf_hdr_merge
bcf_hdr_name2id
bcf_hdr_nsamples
bcf_hdr_parse
bcf_hdr_parse_line
bcf_hdr_printf
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bcf_hdr_seqnames
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bcf_index_build
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bcf_index_load
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bcf_init
bcf_is_snp
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bcf_itr_queryi
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bcf_read
bcf_readrec
bcf_remove_filter
bcf_seqname
bcf_subset
bcf_subset_format
bcf_translate
bcf_unpack
bcf_update_alleles
bcf_update_alleles_str
bcf_update_filter
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bcf_update_format_char
bcf_update_format_float
bcf_update_format_int32
bcf_update_format_string
bcf_update_genotypes
bcf_update_id
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bcf_update_info_flag
bcf_update_info_float
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bcf_write
hrec_add_idx
vcf_format
vcf_hdr_read
vcf_hdr_write
vcf_parse
vcf_read
vcf_write
static variables
bcf_float_missing
bcf_float_vector_end
bcf_type_shift
structs
bcf1_t
bcf_dec_t
bcf_fmt_t
bcf_hdr_t
bcf_hrec_t
bcf_idinfo_t
bcf_idpair_t
bcf_info_t
variant_t
variables
BCF1_DIRTY_ALS
BCF1_DIRTY_FLT
BCF1_DIRTY_ID
BCF1_DIRTY_INF
BCF_BT_CHAR
BCF_BT_FLOAT
BCF_BT_INT16
BCF_BT_INT32
BCF_BT_INT8
BCF_BT_NULL
BCF_DT_CTG
BCF_DT_ID
BCF_DT_SAMPLE
BCF_ERR_CHAR
BCF_ERR_CTG_INVALID
BCF_ERR_CTG_UNDEF
BCF_ERR_LIMITS
BCF_ERR_NCOLS
BCF_ERR_TAG_INVALID
BCF_ERR_TAG_UNDEF
BCF_UN_ALL
BCF_UN_FLT
BCF_UN_FMT
BCF_UN_INFO
BCF_UN_SHR
BCF_UN_STR
VCF_BND
VCF_INDEL
VCF_MNP
VCF_OTHER
VCF_REF
VCF_SNP
bcf_gt_missing
bcf_int16_missing
bcf_int16_vector_end
bcf_int32_missing
bcf_int32_vector_end
bcf_int8_missing
bcf_int8_vector_end
bcf_str_missing
bcf_str_vector_end
bcf_get_variant_types - returns one of VCF_REF, VCF_SNP, etc