SAMRecord.getAlignedPairs

get a range of aligned read and reference positions this is meant to recreate functionality from pysam: https://pysam.readthedocs.io/en/latest/api.html#pysam.AlignedSegment.get_aligned_pairs

range is 0-based half open using chromosomal coordinates

  1. auto getAlignedPairs(int start, int end)
    class SAMRecord
    getAlignedPairs
    (
    bool withRefSeq
    )
    (
    int start
    ,
    int end
    )
  2. auto getAlignedPairs()

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