BedRecord

Constructors

this

this(string line)

string ctor

Members

Functions

opIndex

auto opIndex(ulong idx)

get column idx as a string helps if your bed file isn't a ucsc bed file

opIndexAssign

auto opIndexAssign(string val, ulong idx)

set column idx as a string helps if your bed file isn't a ucsc bed file

toString

string toString()

return bed line

Properties

blockCount

blockCount [@property getter]

column 10: The number of blocks (exons) in the BED line. getter

blockCount

int blockCount [@property setter]

column 10: The number of blocks (exons) in the BED line. setter

blockSizes

blockSizes [@property getter]

column 11: A comma-separated list of the block sizes. The number of items in this list should correspond to blockCount. getter

blockSizes

int[] blockSizes [@property setter]

column 11: A comma-separated list of the block sizes. The number of items in this list should correspond to blockCount. setter

blockStarts

blockStarts [@property getter]

column 12: A comma-separated list of block starts. All of the blockStart positions should be calculated relative to chromStart. The number of items in this list should correspond to blockCount. getter

blockStarts

int[] blockStarts [@property setter]

column 12: A comma-separated list of block starts. All of the blockStart positions should be calculated relative to chromStart. The number of items in this list should correspond to blockCount. setter

contig

contig [@property getter]

column 1: The name of the chromosome or scaffold. getter

contig

string contig [@property setter]

column 1: The name of the chromosome or scaffold. setter

coordinates

coordinates [@property getter]

Columns 2 & 3 as coordinate pair, Zero-based half-open. column 2: The starting position of the feature in the chromosome or scaffold. column 3: The ending position of the feature in the chromosome or scaffold. getter

coordinates

Interval!cs coordinates [@property setter]

Columns 2 & 3 as coordinate pair, Zero-based half-open. column 2: The starting position of the feature in the chromosome or scaffold. column 3: The ending position of the feature in the chromosome or scaffold. setter

end

end [@property getter]

column 3: The ending position of the feature in the chromosome or scaffold.

itemRGB

itemRGB [@property getter]

column 9: An RGB value of the form R,G,B (e.g. 255,0,0). getter

itemRGB

RGB itemRGB [@property setter]

column 9: An RGB value of the form R,G,B (e.g. 255,0,0). Setter

name

name [@property getter]

column 4: Defines the name of the BED line. getter

name

string name [@property setter]

column 4: Defines the name of the BED line. setter

score

score [@property getter]

column 5: A score between 0 and 1000. getter

score

int score [@property setter]

column 5: A score between 0 and 1000. setter

start

start [@property getter]

column 2: The starting position of the feature in the chromosome or scaffold.

strand

strand [@property getter]

column 6: Defines the strand. Either "." (=no strand) or "+" or "-". getter

strand

char strand [@property setter]

column 6: Defines the strand. Either "." (=no strand) or "+" or "-". setter

thickEnd

thickEnd [@property getter]

column 8: The ending position at which the feature is drawn thickly getter

thickEnd

int thickEnd [@property setter]

column 8: The ending position at which the feature is drawn thickly setter

thickStart

thickStart [@property getter]

column 7: The starting position at which the feature is drawn thickly; getter

thickStart

int thickStart [@property setter]

column 7: The starting position at which the feature is drawn thickly; setter

• BedRecord
• RGB