FastqFile

Constructors

this

this(string fn)

Undocumented in source.

Members

Functions

empty

bool empty()

Undocumented in source. Be warned that the author may not have intended to support it.

front

FastqRecord front()

Undocumented in source. Be warned that the author may not have intended to support it.

popFront

void popFront()

Undocumented in source. Be warned that the author may not have intended to support it.

Variables

f

BGZFile f;

Undocumented in source.

last

bool last;

Undocumented in source.

lines

InputRange!string lines;

Undocumented in source.

rec

FastqRecord rec;

Undocumented in source.

import std.stdio;
import htslib.hts_log;
import std.algorithm : map;
import std.array : array;
import std.path : buildPath,dirName;
hts_set_log_level(htsLogLevel.HTS_LOG_INFO);
hts_log_info(__FUNCTION__, "Testing FastqFile");
hts_log_info(__FUNCTION__, "Loading test file");

auto fqs = FastqFile(buildPath(dirName(dirName(dirName(__FILE__))),"htslib","test","fastqs.fq"));
assert(fqs.array.length == 125);
// assert(bg.array == ["122333444455555"]);

• FastqFile
• FastqRecord