htslib

Modules

bgzf

module htslib.bgzf

@file htslib/bgzf.h Low-level routines for direct BGZF operations.

cram

module htslib.cram

@file Consider using the higher level hts_*() API for programs that wish to be file format agnostic (see htslib/hts.h).

faidx

module htslib.faidx

@file htslib/faidx.h FASTA random access.

hfile

module htslib.hfile

@file htslib/hfile.h Buffered low-level input/output streams.

hts

module htslib.hts

@file htslib/hts.h Format-neutral I/O, indexing, and iterator API functions.

hts_endian

module htslib.hts_endian

@file hts_endian.h Byte swapping and unaligned access functions.

hts_expr

module htslib.hts_expr

Undocumented in source.

hts_log

module htslib.hts_log

\file htslib/hts_log.h Configuration of log levels.

hts_os

module htslib.hts_os

@file hts_os.h Operating System specific tweaks, for compatibility with POSIX.

kbitset

module htslib.kbitset

Undocumented in source.

kfunc

module htslib.kfunc

Undocumented in source.

knetfile

module htslib.knetfile

Undocumented in source.

kroundup

module htslib.kroundup

Undocumented in source.

kstring

module htslib.kstring

Undocumented in source.

regidx

module htslib.regidx

@file htslib/regidx.h Region indexing.

sam

module htslib.sam

@file htslib/sam.h High-level SAM/BAM/CRAM sequence file operations.

synced_bcf_reader

module htslib.synced_bcf_reader

@file htslib/synced_bcf_reader.h Stream through multiple VCF files.

tbx

module htslib.tbx

@file htslib/tbx.h Tabix API functions.

thread_pool

module htslib.thread_pool

@file htslib/thread_pool.h Thread pool for multi-threading applications.

vcf

module htslib.vcf

@file htslib/vcf.h High-level VCF/BCF variant calling file operations. Section numbers refer to VCF Specification v4.2: https://samtools.github.io/hts-specs/VCFv4.2.pdf

vcf_sweep

module htslib.vcf_sweep

@file htslib/vcf_sweep.h Forward/reverse sweep API.

vcfutils

module htslib.vcfutils

@file htslib/vcfutils.h Allele-related utility functions.

Public Imports

htslib.bgzf

public import htslib.bgzf;

Undocumented in source.

htslib.cram

public import htslib.cram;

Undocumented in source.

htslib.faidx

public import htslib.faidx;

Undocumented in source.

htslib.hfile

public import htslib.hfile;

Undocumented in source.

htslib.hts_endian

public import htslib.hts_endian;

Undocumented in source.

htslib.hts_expr

public import htslib.hts_expr;

Undocumented in source.

htslib.hts_log

public import htslib.hts_log;

Undocumented in source.

htslib.hts_os

public import htslib.hts_os;

Undocumented in source.

htslib.hts

public import htslib.hts;

Undocumented in source.

htslib.kbitset

public import htslib.kbitset;

Undocumented in source.

htslib.kfunc

public import htslib.kfunc;

Undocumented in source.

htslib.knetfile

public import htslib.knetfile;

Undocumented in source.

htslib.kroundup

public import htslib.kroundup;

Undocumented in source.

htslib.kstring

public import htslib.kstring;

Undocumented in source.

htslib.regidx

public import htslib.regidx;

Undocumented in source.

htslib.sam

public import htslib.sam;

Undocumented in source.

htslib.synced_bcf_reader

public import htslib.synced_bcf_reader;

Undocumented in source.

htslib.tbx

public import htslib.tbx;

Undocumented in source.

htslib.thread_pool

public import htslib.thread_pool;

Undocumented in source.

htslib.vcf_sweep

public import htslib.vcf_sweep;

Undocumented in source.

htslib.vcf

public import htslib.vcf;

Undocumented in source.

htslib.vcfutils

public import htslib.vcfutils;

Undocumented in source.

• dhtslib
• htslib