dhtslib ~develop (2022-01-25T20:23:39.6291596)

SAMReader.opIndex

dhtslib sam reader SAMReader

opIndex with a string contig and an Interval bam["chr1", ZBHO(1,3)]

  1. auto opIndex(string[] regions)
  2. auto opIndex(string contig, Interval!cs coords)
    struct SAMReader
    auto
    opIndex
    (
    CoordSystem cs
    )
    (
    string contig
    ,
    Interval!cs coords
    )
  3. auto opIndex(int tid, Interval!cs coords)
  4. auto opIndex(string contig, Coordinate!bs pos)
  5. auto opIndex(int tid, Coordinate!bs pos)
  6. auto opIndex(string tid, Coordinate!bs pos1, Coordinate!bs pos2)
  7. auto opIndex(int tid, Coordinate!bs pos1, Coordinate!bs pos2)
  8. auto opIndex(string ctg, OffsetType endoff)
  9. auto opIndex(int tid, OffsetType endoff)
  10. auto opIndex(string ctg, Tuple!(Coordinate!bs, OffsetType) coords)
  11. auto opIndex(int tid, Tuple!(Coordinate!bs, OffsetType) coords)
  12. auto opIndex(string ctg, Tuple!(OffsetType, OffsetType) coords)
  13. auto opIndex(int tid, Tuple!(OffsetType, OffsetType) coords)

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