dhtslib ~develop (2022-01-25T20:23:39.6291596)

SAMReader.opIndex

dhtslib sam reader SAMReader

opIndex with a string contig and two Coordinates bam["chr1", ZB(1), ZB(3)]

  1. auto opIndex(string[] regions)
  2. auto opIndex(string contig, Interval!cs coords)
  3. auto opIndex(int tid, Interval!cs coords)
  4. auto opIndex(string contig, Coordinate!bs pos)
  5. auto opIndex(int tid, Coordinate!bs pos)
  6. auto opIndex(string tid, Coordinate!bs pos1, Coordinate!bs pos2)
    struct SAMReader
    deprecated
    auto
    opIndex
    (
    Basis bs
    )
    (
    string tid
    ,
    Coordinate!bs pos1
    ,
    Coordinate!bs pos2
    )
  7. auto opIndex(int tid, Coordinate!bs pos1, Coordinate!bs pos2)
  8. auto opIndex(string ctg, OffsetType endoff)
  9. auto opIndex(int tid, OffsetType endoff)
  10. auto opIndex(string ctg, Tuple!(Coordinate!bs, OffsetType) coords)
  11. auto opIndex(int tid, Tuple!(Coordinate!bs, OffsetType) coords)
  12. auto opIndex(string ctg, Tuple!(OffsetType, OffsetType) coords)
  13. auto opIndex(int tid, Tuple!(OffsetType, OffsetType) coords)

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