bcf_gt_type() - determines type of the genotype
@fmt_ptr: the GT format field as set for example by set_fmt_ptr
@isample: sample index (starting from 0)
@ial: index of the 1st non-reference allele (starting from 1)
@jal: index of the 2nd non-reference allele (starting from 1)
Returns the type of the genotype (one of GT_HOM_RR, GT_HET_RA,
GT_HOM_AA, GT_HET_AA, GT_HAPL_R, GT_HAPL_A or GT_UNKN). If $ial
is not NULL and the genotype has one or more non-reference
alleles, $ial will be set. In case of GT_HET_AA, $ial is the
position of the allele which appeared first in ALT. If $jal is
not null and the genotype is GT_HET_AA, $jal will be set and is
the position of the second allele in ALT.
bcf_gt_type() - determines type of the genotype @fmt_ptr: the GT format field as set for example by set_fmt_ptr @isample: sample index (starting from 0) @ial: index of the 1st non-reference allele (starting from 1) @jal: index of the 2nd non-reference allele (starting from 1)
Returns the type of the genotype (one of GT_HOM_RR, GT_HET_RA, GT_HOM_AA, GT_HET_AA, GT_HAPL_R, GT_HAPL_A or GT_UNKN). If $ial is not NULL and the genotype has one or more non-reference alleles, $ial will be set. In case of GT_HET_AA, $ial is the position of the allele which appeared first in ALT. If $jal is not null and the genotype is GT_HET_AA, $jal will be set and is the position of the second allele in ALT.