dhtslib

Modules

bed

module dhtslib.bed

Undocumented in source.

bgzf

module dhtslib.bgzf

This module provides a wrapper, BGZFile, over an htslib BGZF compressed file/stream. The wrapper acts as a linewise ForwardRange over the file or stream.

coordinates

module dhtslib.coordinates

Coordinates and Coordinate Systems

faidx

module dhtslib.faidx

This module provides a wrapper, IndexedFastaFile over a FASTA. If an index exists, it will be used for rapid random access. If an index does not exist, one will be built.

fastq

module dhtslib.fastq

Undocumented in source.

gff

module dhtslib.gff

GFF file reading and writing

memory

module dhtslib.memory

Undocumented in source.

recordwriter

module dhtslib.recordwriter

Undocumented in source.

sam

module dhtslib.sam

SAMRecord and SAMFile are wrappers for htslib functions relating to SAM/BAM/CRAM* files

tabix

module dhtslib.tabix

Module providing a wrapper, TabixIndexedFile over a line-oriented NGS flat file, such as BED, GFF3, VCF that has been indexed with tabix.

util

module dhtslib.util

Undocumented in source.

vcf

module dhtslib.vcf

Undocumented in source.

Public Imports

dhtslib.bgzf

public import dhtslib.bgzf;

dhtslib.faidx

public import dhtslib.faidx;

dhtslib.sam

public import dhtslib.sam;

dhtslib.tabix

public import dhtslib.tabix;

dhtslib.vcf

public import dhtslib.vcf;

dhtslib.fastq

public import dhtslib.fastq;

dhtslib.gff

public import dhtslib.gff;

dhtslib.bed

public import dhtslib.bed;

dhtslib.coordinates

public import dhtslib.coordinates;

dhtslib.recordwriter

public import dhtslib.recordwriter;

dhtslib.memory

public import dhtslib.memory;

dhtslib.util

public import dhtslib.util;

• dhtslib
• htslib