dhtslib.vcf

Undocumented in source.

Modules

header module dhtslib.vcf.header: This module provides structs that encapsulate VCFHeader and HeaderRecord
reader module dhtslib.vcf.reader: Undocumented in source.
record module dhtslib.vcf.record: Module provides VCF Reader/Writer
writer module dhtslib.vcf.writer: Undocumented in source.

Public Imports

dhtslib.vcf.record public import dhtslib.vcf.record;

dhtslib.vcf.reader public import dhtslib.vcf.reader;

dhtslib.vcf.header public import dhtslib.vcf.header;

dhtslib.vcf.writer public import dhtslib.vcf.writer;

Members

Aliases

RecordTypeToDType alias RecordTypeToDType = AliasSeq!(null, byte, short, int, long, float, null, string): Undocumented in source.

Enums

BcfRecordType enum BcfRecordType: Used by InfoField (bcf_info_t) and FormatField (bcf_fmt_t) to identify the underlying htslib/bcf1_t info and format data type and size. This data is stored in ubyte arrays.
HeaderDictTypes enum HeaderDictTypes: Used to index into bcf_hdr_t's id field of type bcf_idpair_t*[3]
HeaderLengths enum HeaderLengths: Represents the classification of a headerline
HeaderRecordType enum HeaderRecordType: Represents the classification of a headerline
HeaderTypes enum HeaderTypes: Represents the classification of a headerline
UnpackLevel enum UnpackLevel: Levels identifiers for unpacking the underlying variable length data in the bcf1_t. Values are inclusive i.e UnpackLevel.AltAllele unpacks all data before and including the ALT allele Replacement for htslib BCF_UN_*
VariantType enum VariantType: Replacement for htslib VCF_*

Manifest constants

HeaderTypesStrings enum HeaderTypesStrings;: Strings for HeaderTypes

Static variables

HeaderLengthsStrings auto HeaderLengthsStrings;: Strings for HDR_LENGTH
HeaderRecordTypeStrings auto HeaderRecordTypeStrings;: Strings for HeaderRecordType
RecordTypeSizes auto RecordTypeSizes;: Byte sizes for RecordType

Meta

Source

See Source File

dhtslib modules