dhtslib ~master (2020-09-09T05:17:46Z)
Home
Dub
Repo
cram_fd
htslib
hts
see cram.h, sam.h, sam.d
extern (
C
)
struct
cram_fd
Meta
Source
See Implementation
htslib
hts
aliases
cram_option
hts_id2name_f
hts_idx_t
hts_itr_multi_destroy
hts_itr_multi_query_func
hts_itr_multi_t
hts_itr_query_func
hts_name2id_f
hts_pair32_t
hts_pos_t
hts_readrec_func
hts_seek_func
hts_tell_func
enums
HTS_IDX_FLAG
HTS_PARSE_FLAGS
htsCompression
htsExactFormat
htsFormatCategory
hts_fmt_option
sam_fields
functions
hts_bin_first
hts_bin_parent
hts_check_EOF
hts_close
hts_detect_format
hts_file_type
hts_format_description
hts_format_file_extension
hts_free
hts_get_format
hts_getline
hts_hopen
hts_idx_destroy
hts_idx_finish
hts_idx_fmt
hts_idx_get_meta
hts_idx_get_n_no_coor
hts_idx_get_stat
hts_idx_init
hts_idx_load
hts_idx_load2
hts_idx_load3
hts_idx_push
hts_idx_save
hts_idx_save_as
hts_idx_seqnames
hts_idx_set_meta
hts_idx_tbi_name
hts_itr_destroy
hts_itr_multi_bam
hts_itr_multi_cram
hts_itr_multi_next
hts_itr_next
hts_itr_query
hts_itr_querys
hts_itr_regions
hts_open
hts_open_format
hts_opt_add
hts_opt_apply
hts_opt_free
hts_parse_decimal
hts_parse_format
hts_parse_opt_list
hts_parse_reg
hts_parse_reg64
hts_parse_region
hts_readlines
hts_readlist
hts_reg2bin
hts_reglist_create
hts_reglist_free
hts_resize
hts_resize_array_
hts_set_cache_size
hts_set_fai_filename
hts_set_opt
hts_set_thread_pool
hts_set_threads
hts_version
manifest constants
FT_BCF
FT_BCF_GZ
FT_GZ
FT_STDIN
FT_UNKN
FT_VCF
FT_VCF_GZ
HTS_IDX_DELIM
HTS_IDX_NOCOOR
HTS_IDX_NONE
HTS_IDX_REST
HTS_IDX_START
HTS_PATH_SEPARATOR_CHAR
HTS_PATH_SEPARATOR_STR
HTS_POS_MAX
HTS_POS_MIN
HTS_RESIZE_CLEAR
HTS_VERSION
structs
__hts_idx_t
aux_key_t
cram_fd
htsFile
htsFormat
htsThreadPool
hts_itr_t
hts_opt
hts_pair64_max_t
hts_pair64_t
hts_pair_pos_t
hts_reglist_t
hts_tpool
variables
HTS_FMT_BAI
HTS_FMT_CRAI
HTS_FMT_CSI
HTS_FMT_TBI
seq_nt16_int
seq_nt16_str
seq_nt16_table
see cram.h, sam.h, sam.d