htsFile

Data and metadata for an hts file; part of public and private ABI

extern (C)

struct htsFile {

int64_t lineno;

kstring_t line;

char* fn_aux;

htsFormat format;

hts_idx_t* idx;

const(char)* fnidx;

sam_hdr_t* bam_header;

}

Members

Unions

FP union FP: hFile plus any needed bgzf or CRAM (if applicable) structure data

Variables

bam_header sam_hdr_t* bam_header;: Undocumented in source.
fn char* fn;: Undocumented in source.
fn_aux char* fn_aux;: Undocumented in source.
fnidx const(char)* fnidx;: Undocumented in source.
format htsFormat format;: Undocumented in source.
fp FP fp;: Undocumented in source.
idx hts_idx_t* idx;: Undocumented in source.
line kstring_t line;: Undocumented in source.
lineno int64_t lineno;: Undocumented in source.
state void* state;: Undocumented in source.

Meta

Source

See Implementation

htslib hts aliases

enums

functions

manifest constants

structs

variables