dhtslib ~cigar_and_md_api (2022-01-17T03:42:31.0299165)
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htsCompression
dhtslib
htslib
hts
Compression type
Values
Value
Meaning
no_compression
gzip
bgzf
custom
compression_maximum
32_767
Meta
Source
See Implementation
dhtslib
htslib
hts
aliases
cram_option
hts_id2name_f
hts_idx_t
hts_itr_multi_query_func
hts_itr_query_func
hts_name2id_f
hts_readrec_func
hts_seek_func
hts_tell_func
enums
htsCompression
htsExactFormat
htsFormatCategory
hts_fmt_option
sam_fields
functions
hts_bin_first
hts_bin_parent
hts_check_EOF
hts_close
hts_detect_format
hts_file_type
hts_format_description
hts_format_file_extension
hts_get_format
hts_getline
hts_hopen
hts_idx_destroy
hts_idx_finish
hts_idx_get_meta
hts_idx_get_n_no_coor
hts_idx_get_stat
hts_idx_init
hts_idx_load
hts_idx_load2
hts_idx_push
hts_idx_save
hts_idx_save_as
hts_idx_seqnames
hts_idx_set_meta
hts_itr_destroy
hts_itr_multi_bam
hts_itr_multi_cram
hts_itr_multi_destroy
hts_itr_multi_next
hts_itr_next
hts_itr_query
hts_itr_querys
hts_itr_regions
hts_open
hts_open_format
hts_opt_add
hts_opt_apply
hts_opt_free
hts_parse_decimal
hts_parse_format
hts_parse_opt_list
hts_parse_reg
hts_readlines
hts_readlist
hts_reglist_free
hts_set_cache_size
hts_set_fai_filename
hts_set_opt
hts_set_thread_pool
hts_set_threads
hts_version
manifest constants
FT_BCF
FT_BCF_GZ
FT_GZ
FT_STDIN
FT_UNKN
FT_VCF
FT_VCF_GZ
HTS_IDX_NOCOOR
HTS_IDX_NONE
HTS_IDX_REST
HTS_IDX_START
HTS_PARSE_THOUSANDS_SEP
static variables
seq_nt16_str
structs
__hts_idx_t
aux_key_t
cram_fd
htsFile
htsFormat
htsThreadPool
hts_itr_multi_t
hts_itr_t
hts_opt
hts_pair32_t
hts_pair64_max_t
hts_pair64_t
hts_reglist_t
hts_tpool
variables
HTS_FMT_BAI
HTS_FMT_CRAI
HTS_FMT_CSI
HTS_FMT_TBI
seq_nt16_int
seq_nt16_table
Compression type