htsFormat

hts file complete file format information

extern (C)

struct htsFormat {

htsFormatCategory category;

htsExactFormat format;

htsCompression compression;

short compression_level;

void* specific;

}

Members

Structs

Vers struct Vers: format version

Variables

category htsFormatCategory category;: Broad format category (sequence data, variant data, index, regions, etc.)
compression htsCompression compression;: Compression type
compression_level short compression_level;: currently unused
format htsExactFormat format;: Specific format (SAM, BAM, CRAM, BCF, VCF, TBI, BED, etc.)
specific void* specific;: format specific options; see struct hts_opt.
v Vers v;: format version

Meta

Source

See Implementation

dhtslib htslib hts aliases

enums

functions

manifest constants

static variables

seq_nt16_str

structs

variables