htsFile

Data and metadata for an hts file; part of public and private ABI

extern (C)

struct htsFile {

int64_t lineno;

kstring_t line;

char* fn_aux;

htsFormat format;

}

Members

Unions

FP union FP: hFile plus any needed bgzf or CRAM (if applicable) structure data

Variables

fn char* fn;: filename
fn_aux char* fn_aux;: auxillary (i.e, index) file name
format htsFormat format;: hts file complete file format information
fp FP fp;: hFile plus any needed bgzf or CRAM (if applicable) structure data
line kstring_t line;: buffer to hold line
lineno int64_t lineno;: uncompressed(?) file line no.

Meta

Source

See Implementation

dhtslib htslib hts aliases

enums

functions

manifest constants

static variables

seq_nt16_str

structs

variables