dhtslib ~cigar_and_md_api (2022-01-17T03:42:31.0299165)
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BAM_CIGAR_STR
dhtslib
htslib
sam
internal
extern (
C
)
auto
BAM_CIGAR_STR
=
"MIDNSHP=XB"c
;
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dhtslib
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sam
aliases
bam_index_build
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BAM_CMATCH
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bam_aux_del
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bam_aux_update_array
bam_aux_update_float
bam_aux_update_int
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bam_cigar_gen
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bam_cigar_type
bam_copy1
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bam_dup1
bam_endpos
bam_flag2str
bam_get_aux
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bam_hdr_init
bam_hdr_read
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bam_index_load
bam_init1
bam_is_mrev
bam_is_rev
bam_itr_next
bam_mplp_auto
bam_mplp_constructor
bam_mplp_destroy
bam_mplp_destructor
bam_mplp_init
bam_mplp_init_overlaps
bam_mplp_reset
bam_mplp_set_maxcnt
bam_name2id
bam_plp_auto
bam_plp_constructor
bam_plp_destroy
bam_plp_destructor
bam_plp_init
bam_plp_next
bam_plp_push
bam_plp_reset
bam_plp_set_maxcnt
bam_read1
bam_seqi
bam_str2flag
bam_write1
sam_cap_mapq
sam_format1
sam_hdr_change_HD
sam_hdr_parse
sam_hdr_read
sam_hdr_write
sam_index_build
sam_index_build2
sam_index_build3
sam_index_load
sam_index_load2
sam_itr_next
sam_itr_queryi
sam_itr_querys
sam_itr_regions
sam_open_mode
sam_open_mode_opts
sam_parse1
sam_prob_realn
sam_read1
sam_write1
structs
__bam_mplp_t
__bam_plp_t
bam1_core_t
bam1_t
bam_hdr_t
bam_pileup1_t
unions
bam_pileup_cd
variables
BAM_CIGAR_MASK
BAM_CIGAR_SHIFT
BAM_CIGAR_STR
BAM_CIGAR_TYPE
BAM_FDUP
BAM_FMREVERSE
BAM_FMUNMAP
BAM_FPAIRED
BAM_FPROPER_PAIR
BAM_FQCFAIL
BAM_FREAD1
BAM_FREAD2
BAM_FREVERSE
BAM_FSECONDARY
BAM_FSUPPLEMENTARY
BAM_FUNMAP
SAM_FORMAT_VERSION
internal