bam_hdr_t

! @typedef @abstract Structure for the alignment header. @field n_targets number of reference sequences @field l_text length of the plain text in the header @field target_len lengths of the reference sequences @field target_name names of the reference sequences @field text plain text @field sdict header dictionary

Members

Variables

cigar_tab
byte* cigar_tab;

? CIGAR table

ignore_sam_err
int ignore_sam_err;

? Ignore SAM format errors?

l_text
uint l_text;

? text data length

n_targets
int n_targets;

number of targets (contigs)

sdict
void* sdict;

?

target_len
uint* target_len;

? number of targets (contigs)

target_name
char** target_name;

? C-style array of target (contig) names

text
char* text;

?

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