bin calculated by bam_reg2bin()
bitwise flag
? template length
length of extra NULs between qname & cigar (for alignment)
length of the query name
length of the query sequence (read)
0-based leftmost coordinate of next read in template (mate)
chromosome ID of next read in template, defined by bam_hdr_t
number of CIGAR operations
0-based leftmost coordinate
mapping quality
chromosome ID, defined by bam_hdr_t
padding
! @typedef @abstract Structure for core alignment information. @field tid chromosome ID, defined by bam_hdr_t @field pos 0-based leftmost coordinate @field bin bin calculated by bam_reg2bin() @field qual mapping quality @field l_qname length of the query name @field flag bitwise flag @field l_extranul length of extra NULs between qname & cigar (for alignment) @field n_cigar number of CIGAR operations @field l_qseq length of the query sequence (read) @field mtid chromosome ID of next read in template, defined by bam_hdr_t @field mpos 0-based leftmost coordinate of next read in template