htsRealnFlags

Used as flag parameter in sam_prob_realn.

Values

Value	Meaning
BAQ_APPLY`1`
BAQ_EXTEND`2`
BAQ_REDO`4`
BAQ_AUTO`0 << 3`
BAQ_ILLUMINA`1 << 3`
BAQ_PACBIOCCS`2 << 3`
BAQ_PACBIO`3 << 3`
BAQ_ONT`4 << 3`
BAQ_GENAPSYS`5 << 3`

Meta

Source

See Implementation

htslib sam aliases

enums

htsRealnFlags

functions

manifest constants

static variables

bam_cigar_table

structs

unions

bam_pileup_cd