dhtslib ~develop (2026-02-25T17:15:04.0517913)
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sam_hdr_read
htslib
sam
Read a header from a SAM, BAM or CRAM file.
extern (
C
) @
system
@
nogc
nothrow
sam_hdr_t
*
sam_hdr_read
(
samFile
*
fp
)
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bam_hdr_t
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bam_init1
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bam_plp_insertion
bam_plp_insertion_mod
bam_plp_next
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bam_read1
bam_seqi
bam_set1
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bam_str2flag
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hts_base_mod_state_alloc
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sam_cap_mapq
sam_format1
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sam_hdr_add_line
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sam_hdr_change_HD
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sam_hdr_destroy
sam_hdr_dup
sam_hdr_find_hd
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sam_hdr_find_tag_pos
sam_hdr_incr_ref
sam_hdr_init
sam_hdr_length
sam_hdr_line_index
sam_hdr_line_name
sam_hdr_name2tid
sam_hdr_nref
sam_hdr_parse
sam_hdr_pg_id
sam_hdr_read
sam_hdr_remove_except
sam_hdr_remove_line_id
sam_hdr_remove_line_pos
sam_hdr_remove_lines
sam_hdr_remove_tag_hd
sam_hdr_remove_tag_id
sam_hdr_str
sam_hdr_tid2len
sam_hdr_tid2name
sam_hdr_update_hd
sam_hdr_update_line
sam_hdr_write
sam_idx_init
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sam_passes_filter
sam_prob_realn
sam_read1
sam_write1
stringify_argv
manifest constants
BAM_CBACK
BAM_CDEL
BAM_CDIFF
BAM_CEQUAL
BAM_CHARD_CLIP
BAM_CIGAR_MASK
BAM_CIGAR_SHIFT
BAM_CIGAR_STR
BAM_CIGAR_TYPE
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BAM_CPAD
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BAM_CSOFT_CLIP
BAM_FDUP
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BAM_FMUNMAP
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BAM_FQCFAIL
BAM_FREAD1
BAM_FREAD2
BAM_FREVERSE
BAM_FSECONDARY
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BAM_FUNMAP
BAM_USER_OWNS_DATA
BAM_USER_OWNS_STRUCT
SAM_FORMAT_VERSION
static variables
bam_cigar_table
structs
bam1_core_t
bam1_t
bam_mplp_s
bam_pileup1_t
bam_plp_s
hts_base_mod
hts_base_mod_state
hts_filter_t
sam_hdr_t
sam_hrecs_t
unions
bam_pileup_cd
Read a header from a SAM, BAM or CRAM file.