dhtslib ~dstep2 (2022-03-14T21:51:44.4661389)

FormatField

dhtslib vcf record

Struct to aid in conversion of VCF format data into D types

struct FormatField {
string key;
BcfRecordType type;
int nSamples;
int n;
int size;
ubyte[] data;
Bcf1 line;
this(string key, bcf_fmt_t* fmt, Bcf1 line);
this(this);
this(string key, bcf_fmt_t* fmt);
auto to();
}

Constructors

this
this(string key, bcf_fmt_t* fmt, Bcf1 line)

ctor from VCFRecord

this
this(string key, bcf_fmt_t* fmt)

string and format ctor

Postblit

this(this)
this(this)

Explicit postblit to avoid https://github.com/blachlylab/dhtslib/issues/122

Members

Functions

to
auto to()

convert to a D type array if int, float, bool, or string type array very similar to InfoField.to This returns chunks as we separated FORMAT values by sample

Variables

data
ubyte[] data;

reference of info field data

key
string key;

String identifier of info field

line
Bcf1 line;

VCFRecord refct

n
int n;

number of data elements per sample

nSamples
int nSamples;

number of samples

size
int size;

number of bytes per sample

type
BcfRecordType type;

BCF TYPE indicator

Meta

Source

See Implementation

dhtslib vcf record aliasesstructsunions

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