GT

Represents individual GT values as encoded in BCF. This is described in the VCF 4.2 spec section 6.3.3. In summary it can be an int, short, or byte and encodes an allele value and a phased flag e.g (allele + 1) << 1 | phased

union GT (

) {

import std.bitmanip : bitfields;;

T raw;

auto getAllele();

void setAllele(int val);

bool isMissing();

void setMissing();

bool isPadding();

}

Members

Functions

getAllele auto getAllele(): get allele value
isMissing bool isMissing(): check if value is missing
isPadding bool isPadding(): check if value is padding
setAllele void setAllele(int val): set allele value
setMissing void setMissing(): set value as missing

Variables

raw T raw;: Undocumented in source.

GT

Members

Functions

Variables

Meta

Source