Genotype

Struct to represent VCF/BCF genotype data

struct Genotype {

BcfRecordType type;

this(FormatField gt, ulong sampleIdx);

bool isNull();

auto alleles();

auto getPloidy();

auto toString();

auto toString();

}

Constructors

this this(FormatField gt, ulong sampleIdx): ctor from FormatField

Postblit

this(this) this(this): Explicit postblit to avoid https://github.com/blachlylab/dhtslib/issues/122

Members

Functions

alleles auto alleles(): Undocumented in source. Be warned that the author may not have intended to support it.
getPloidy auto getPloidy(): get genotype ploidy
isNull bool isNull(): Undocumented in source. Be warned that the author may not have intended to support it.
toString auto toString(): mixin for genotype printing
toString auto toString(): get string representation

Variables

data void[] data;: Array of encoded genotypes
line Bcf1 line;: VCFRecord refct
type BcfRecordType type;: Type of underlying format data

Meta

Source

See Implementation

dhtslib vcf record aliases

BCFRecord

structs

unions

GT