dhtslib ~master (2020-09-09T05:17:46Z)

VCFRecord.this

dhtslib vcf VCFRecord

VCFRecord

Construct a bcf/vcf record, backed by bcf1_t, from: an existing bcf1_t, parameters, or a VCF line.

Internal backing by bcf1_t means it must conform to the BCF2 rules -- i.e., header must contain appropriate INFO, CONTIG, and FILTER lines.

Protip: specifying alternate MAX_UNPACK can speed it tremendously as it will not unpack all fields, only up to those requested (see htslib.vcf) For example, BCF_UN_STR is up to ALT inclusive, and BCF_UN_STR is up to FILTER

  1. this(T* h, bcf1_t* b, int MAX_UNPACK)
    class VCFRecord
    this
    (
    T
    )
    (
    T* h
    ,
    bcf1_t* b
    ,
    int MAX_UNPACK = BCF_UN_ALL
    )
    if (
    is(T == VCFHeader) ||
    is(T == bcf_hdr_t)
    )
  2. this(VCFHeader* vcfhdr, string chrom, int pos, string id, string _ref, string alt, float qual, SS filter)
  3. this(VCFHeader* vcfhdr, string line, int MAX_UNPACK)

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dhtslib vcf VCFRecord constructorsdestructorsfunctionsvariables

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