htslib.regidx

@file htslib/regidx.h Region indexing.

Members

Aliases

regidx_free_f alias regidx_free_f = void function(void* payload): Undocumented in source but is binding to C. You might be able to learn more by searching the web for its name.
regidx_parse_f
alias regidx_parse_f = int function(const(char)* line, char** chr_beg, char** chr_end, hts_pos_t* beg, hts_pos_t* end, void* payload, void* usr): Undocumented in source but is binding to C. You might be able to learn more by searching the web for its name.

Functions

REGITR_END auto REGITR_END(T itr): Undocumented in source. Be warned that the author may not have intended to support it.
REGITR_START auto REGITR_START(T itr): Undocumented in source. Be warned that the author may not have intended to support it.
regidx_destroy void regidx_destroy(regidx_t* idx): Undocumented in source but is binding to C. You might be able to learn more by searching the web for its name.
regidx_init regidx_t* regidx_init(const(char)* fname, regidx_parse_f parsef, regidx_free_f freef, size_t payload_size, void* usr): Undocumented in source but is binding to C. You might be able to learn more by searching the web for its name.
regidx_init_string regidx_t* regidx_init_string(const(char)* string, regidx_parse_f parsef, regidx_free_f freef, size_t payload_size, void* usr): Undocumented in source but is binding to C. You might be able to learn more by searching the web for its name.
regidx_insert int regidx_insert(regidx_t* idx, char* line): Undocumented in source but is binding to C. You might be able to learn more by searching the web for its name.
regidx_insert_list int regidx_insert_list(regidx_t* idx, char* line, char delim): Undocumented in source but is binding to C. You might be able to learn more by searching the web for its name.
regidx_nregs int regidx_nregs(regidx_t* idx): Undocumented in source but is binding to C. You might be able to learn more by searching the web for its name.
regidx_overlap int regidx_overlap(regidx_t* idx, const(char)* chr, hts_pos_t beg, hts_pos_t end, regitr_t* itr): Undocumented in source but is binding to C. You might be able to learn more by searching the web for its name.
regidx_parse_bed
int regidx_parse_bed(const(char)* , char** , char** , hts_pos_t* , hts_pos_t* , void* , void* ): Undocumented in source but is binding to C. You might be able to learn more by searching the web for its name.
regidx_parse_reg
int regidx_parse_reg(const(char)* , char** , char** , hts_pos_t* , hts_pos_t* , void* , void* ): Undocumented in source but is binding to C. You might be able to learn more by searching the web for its name.
regidx_parse_tab
int regidx_parse_tab(const(char)* , char** , char** , hts_pos_t* , hts_pos_t* , void* , void* ): Undocumented in source but is binding to C. You might be able to learn more by searching the web for its name.
regidx_parse_vcf
int regidx_parse_vcf(const(char)* , char** , char** , hts_pos_t* , hts_pos_t* , void* , void* ): Undocumented in source but is binding to C. You might be able to learn more by searching the web for its name.
regidx_push int regidx_push(regidx_t* idx, char* chr_beg, char* chr_end, hts_pos_t beg, hts_pos_t end, void* payload): Undocumented in source but is binding to C. You might be able to learn more by searching the web for its name.
regidx_seq_names
char** regidx_seq_names(regidx_t* idx, int* n): Undocumented in source but is binding to C. You might be able to learn more by searching the web for its name.
regidx_seq_nregs int regidx_seq_nregs(regidx_t* idx, const(char)* seq): Undocumented in source but is binding to C. You might be able to learn more by searching the web for its name.
regitr_copy void regitr_copy(regitr_t* dst, regitr_t* src): Undocumented in source but is binding to C. You might be able to learn more by searching the web for its name.
regitr_destroy void regitr_destroy(regitr_t* itr): Undocumented in source but is binding to C. You might be able to learn more by searching the web for its name.
regitr_init regitr_t* regitr_init(regidx_t* idx): Undocumented in source but is binding to C. You might be able to learn more by searching the web for its name.
regitr_loop int regitr_loop(regitr_t* itr): Undocumented in source but is binding to C. You might be able to learn more by searching the web for its name.
regitr_overlap int regitr_overlap(regitr_t* itr): Undocumented in source but is binding to C. You might be able to learn more by searching the web for its name.
regitr_reset void regitr_reset(regidx_t* idx, regitr_t* itr): Undocumented in source but is binding to C. You might be able to learn more by searching the web for its name.

Manifest constants

REGIDX_MAX enum REGIDX_MAX;: Undocumented in source but is binding to C. You might be able to learn more by searching the web for its name.

Structs

regidx_t struct regidx_t: Undocumented in source but is binding to C. You might be able to learn more by searching the web for its name.
regitr_t struct regitr_t: Undocumented in source but is binding to C. You might be able to learn more by searching the web for its name.

htslib.regidx

Members

Aliases

Functions

Manifest constants

Structs

Meta

Source