htsFile

@brief File handle returned by hts_open() etc. This structure should be considered opaque by end users. There should be no need to access most fields directly in user code, and in cases where it is desirable accessor functions such as hts_get_format() are provided.

@system nothrow @nogc extern (C)

struct htsFile {

import std.bitmanip : bitfields;;

FP fp;

const(char)* fnidx;

sam_hdr_t* bam_header;

hts_filter_t* filter;

}

Members

Unions

FP union FP: hFile plus any needed bgzf or CRAM (if applicable) structure data

Variables

bam_header sam_hdr_t* bam_header;: Undocumented in source.
filter hts_filter_t* filter;: Undocumented in source.
fn char* fn;: filename
fn_aux char* fn_aux;: auxillary (i.e, index) file name
fnidx const(char)* fnidx;: Undocumented in source.
format htsFormat format;: hts file complete file format information
fp FP fp;: hFile plus any needed bgzf or CRAM (if applicable) structure data
idx hts_idx_t* idx;: Undocumented in source.
line kstring_t line;: buffer to hold line
lineno long lineno;: uncompressed(?) file line no.
state void* state;: Undocumented in source.

htsFile

Members

Unions

Variables

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