hts_fmt_option

Mostly CRAM only, but this could also include other format options

Values

Value	Meaning
CRAM_OPT_DECODE_MD`0`
CRAM_OPT_PREFIX`1`
CRAM_OPT_VERBOSITY`2`
CRAM_OPT_SEQS_PER_SLICE`3`
CRAM_OPT_SLICES_PER_CONTAINER`4`
CRAM_OPT_RANGE`5`
CRAM_OPT_VERSION`6`
CRAM_OPT_EMBED_REF`7`
CRAM_OPT_IGNORE_MD5`8`
CRAM_OPT_REFERENCE`9`
CRAM_OPT_MULTI_SEQ_PER_SLICE`10`
CRAM_OPT_NO_REF`11`
CRAM_OPT_USE_BZIP2`12`
CRAM_OPT_SHARED_REF`13`
CRAM_OPT_NTHREADS`14`
CRAM_OPT_THREAD_POOL`15`
CRAM_OPT_USE_LZMA`16`
CRAM_OPT_USE_RANS`17`
CRAM_OPT_REQUIRED_FIELDS`18`
CRAM_OPT_LOSSY_NAMES`19`
CRAM_OPT_BASES_PER_SLICE`20`
CRAM_OPT_STORE_MD`21`
CRAM_OPT_STORE_NM`22`
CRAM_OPT_RANGE_NOSEEK`23`
CRAM_OPT_USE_TOK`24`
CRAM_OPT_USE_FQZ`25`
CRAM_OPT_USE_ARITH`26`
CRAM_OPT_POS_DELTA`27`
HTS_OPT_COMPRESSION_LEVEL`100`
HTS_OPT_NTHREADS`101`
HTS_OPT_THREAD_POOL`102`
HTS_OPT_CACHE_SIZE`103`
HTS_OPT_BLOCK_SIZE`104`
HTS_OPT_FILTER`105`
HTS_OPT_PROFILE`106`
FASTQ_OPT_CASAVA`1000`
FASTQ_OPT_AUX`1001`
FASTQ_OPT_RNUM`1002`
FASTQ_OPT_BARCODE`1003`