htsFormat

Undocumented in source but is binding to C. You might be able to learn more by searching the web for its name.

Members

Structs

Vers
struct Vers

format version

Variables

category
htsFormatCategory category;

Broad format category (sequence data, variant data, index, regions, etc.)

compression
htsCompression compression;

Compression type

compression_level
short compression_level;

currently unused

format
htsExactFormat format;

Specific format (SAM, BAM, CRAM, BCF, VCF, TBI, BED, etc.)

specific
void* specific;

format specific options; see struct hts_opt.

v
Vers v;

format version

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